D. F. Green and B. Tidor. "Hierarchical energy functions for protein design: Methodological advances." Manuscript in preparation.
D. F. Green, B. A. Joughin and B. Tidor. "Design considerations for action-at-a-distance interactions that enhance binding affinity." J. Mol. Biol. Submitted.
D. F. Green, A. T. Dennis, P. S. Fam, B. Tidor and A. Jasanoff. "Rational design of new binding specificity by simultaneous mutagenesis of calmodulin and a target peptide." Biochemsitry In press (2006). doi:10.1021/bi060857u
D. F. Green and B. Tidor. "Eschericia coli glutaminyl-tRNA synthetase is electrostatically optimized for binding of its cognate substrates." J. Mol. Biol. 342 (2): 435-452 (2004). doi:10.1016/j.jmb.2004.06.087 C. Mattos, J. D. Cohen, D. F. Green, B. Tidor and M. Karplus. "X-ray structural and simulation analysis of a protein mutant: The value of a combined approach." Proteins: Struct. Func. Bioinf. 55 (3): 733-742 (2004). doi:10.1002/prot.20031
D. F. Green and B. Tidor. "A comprehensive evaluation of ab initio charge determination methods for use in continuum electrostatic calculations." J. Phys. Chem. B. 107 (37): 10261-10273 (2003). doi:10.1021/jp0350971
D. F. Green and B. Tidor. "Evaluation of electrostatic interactions." Current Protocols in Bioinformatics, Unit 8.3 (A. D. Baxevanis et al., Eds.) John Wiley & Sons, Inc. (2003). doi:10.1002/0471250953.bi0803s02
B. H. Sherman, D. F. Green and K. H. Ruping. "Method and system for interactive molecular docking and feedback." US patent pending approval. Filed 06/10/2004 (Provisional 06/10/2003), Appl. No. 2005/0055187 A1. B. H. Sherman, D. F. Green and K. H. Ruping. "Apparatus and method for integrating a physical molecular model with a computer-based visualization and simulation model." US patent pending approval. Filed 12/31/2003 (Provisional 12/31/2002), Appl. No. 2005/0004764 A1.
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