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1.
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D. F. Green and B. Tidor.
"Hierarchical energy functions for protein design: Methodological advances."
Manuscript in preparation.
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2.
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D. F. Green, B. A. Joughin and B. Tidor.
"Design considerations for action-at-a-distance interactions that enhance binding affinity."
J. Mol. Biol. Submitted.
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3.
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D. F. Green, A. T. Dennis, P. S. Fam, B. Tidor and A. Jasanoff.
"Rational design of new binding specificity by simultaneous mutagenesis of calmodulin and a target peptide."
Biochemsitry In press (2006).
doi:10.1021/bi060857u
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4.
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D. F. Green and B. Tidor.
"Design of improved protein inhibitors of HIV-1 cell entry: Optimization of electrostatic interactions at the binding interface."
Proteins: Struct. Func. Bioinf. 60 (4):644-657 (2005).
doi:10.1002/prot.20540
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5.
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B. A. Joughin, D. F. Green and B. Tidor.
"Action-at-a-distance interactions enhance protein binding affinity."
Protein Sci. 14 (5): 1363-1369 (2005).
doi:10.1110/ps.041283105
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6.
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D. F. Green and B. Tidor.
"Eschericia coli glutaminyl-tRNA synthetase is electrostatically optimized for binding of its cognate substrates."
J. Mol. Biol. 342 (2): 435-452 (2004).
doi:10.1016/j.jmb.2004.06.087
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7.
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C. Mattos, J. D. Cohen, D. F. Green, B. Tidor and M. Karplus.
"X-ray structural and simulation analysis of a protein mutant: The value of a combined approach."
Proteins: Struct. Func. Bioinf. 55 (3): 733-742 (2004). doi:10.1002/prot.20031
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8.
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D. F. Green and B. Tidor.
"A comprehensive evaluation of ab initio charge determination methods for use in continuum electrostatic calculations."
J. Phys. Chem. B. 107 (37): 10261-10273 (2003). doi:10.1021/jp0350971
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9.
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F. Jiang, H. A. Jenkins, D. F. Green, G. P. A. Yap and R. K. Pomeroy.
"A novel metal-chain extension reaction: synthesis of (X)[Os(CO)3(CNBut)]nMn(CO)5 (X = Cl, Br, I; n = 1, 2, 3)."
Can. J. Chem 80 (3): 281-291 (2002). doi:10.1139/v02-016
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10.
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R. J. Batchelor, D. F. Green, B. D. Johnston, B. O. Patrick and B. M. Pinto.
"Conformational preferences in glycosylamines. Implications for the exo-anomeric effect."
Carbohyd. Res. 330 (3): 421-426 (2001). doi:10.1016/S0008-6215(00)00304-9
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11.
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K. D. Randell, B. D. Johnston, D. F. Green and B. M. Pinto.
"Is there a generalized reverse anomeric effect? Substituent and solvent effects on the configurational equilibria of neutral and protonated N-arylglucopyranosylamines and N-aryl-5-thioglucopyranosylamines."
J. Org. Chem 65 (1): 220-226 (2000). doi:10.1021/jo991520j
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1.
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D. F. Green and B. Tidor.
"Evaluation of electrostatic interactions."
Current Protocols in Bioinformatics, Unit 8.3 (A. D. Baxevanis et al., Eds.) John Wiley & Sons, Inc. (2003). doi:10.1002/0471250953.bi0803s02
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1.
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B. H. Sherman, D. F. Green and K. H. Ruping.
"Method and system for interactive molecular docking and feedback."
US patent pending approval. Filed 06/10/2004 (Provisional 06/10/2003), Appl. No.
2005/0055187 A1.
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2.
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B. H. Sherman, D. F. Green and K. H. Ruping.
"Apparatus and method for integrating a physical molecular model with a computer-based visualization and simulation model."
US patent pending approval. Filed 12/31/2003 (Provisional 12/31/2002), Appl. No.
2005/0004764 A1. |
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1.
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D. F. Green, M. D. Altman and B. Tidor.
"Hierarchical energy functions for the design of protein binding interfaces."
American Chemical Society 229th National Meeting,
San Diego, CA, USA. Mar. 13 – 17, 2005.
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2.
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D. F. Green, A. Jasanoff and B. Tidor.
"Computational design of a protein calcium sensor for single-cell MRI imaging of neural activity."
Chemical Biophysics Symposium,
Toronto, ON, Canada. Mar. 19 – 21, 2004.
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1.
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J. H. Cheng and D. F. Green.
"Specificity of Protein--Protein interactions: Lessons from G-protein subunit association."
The Protein Society 20th Annual Symposium,
San Diego, CA, USA. Aug. 5 – 9, 2006.
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2.
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D. F. Green, A. T. Dennis, P. S. Fam, B. Tidor and A. Jasanoff.
"Redesigning a natural protein complex into an orthogonal binding pair."
The Protein Society 19th Annual Symposium,
Boston, MA, USA. Jul. 30 – Aug. 3, 2005.
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3.
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D. F. Green, A. Jasanoff and B. Tidor.
"Computational design of a protein calcium sensor for high-resolution MRI."
The Protein Society 18th Annual Symposium,
San Diego, CA, USA. Aug. 14 – 18, 2004.
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4.
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D. F. Green and B. Tidor.
"Analysis and design of protein binding interfaces with enhanced electrostatic complementarity."
The Protein Society 17th Annual Symposium,
Boston, MA, USA. Jul. 26 – 30, 2003.
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5.
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D. F. Green, B. A. Joughin and B. Tidor.
"Design of action-at-a-distance electrostatic interactions that enhance binding affinity."
The Protein Society 16th Annual Symposium,
San Diego, CA, USA. Aug. 17 – 21, 2002.
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6.
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D. F. Green and B. Tidor.
"Application of electrostatic affinity optimization to the design and improvement of HIV-1 cell membrane fusion inhibitors."
The Protein Society 15th Annual Symposium,
Philadelphia, PA, USA. July 28 – Aug. 1, 2001.
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7.
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D. F. Green and B. Tidor.
"Electrostatic affinity optimization and enzyme specificity: A study of glutaminyl-tRNA synthetase."
The Protein Society 13th Annual Symposium,
Boston, MA, USA. July 24 – 28, 1999.
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8.
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D. F. Green and B. M. Pinto.
"Conformational analysis of peptide mimics of carbohydrates."
11th Annual CIC Western Canada Undergraduate Chemistry Conference,
Winnipeg, MB, Canada. May 1 – 3, 1997.
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