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Run Stamp  start time       Sat Apr 26 10:09:49 2008
           machine name     3dma.ams.sunysb.edu
           operating system Linux
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Input Data Options
	simulated data (0)
	tomographic data (1)
	segmented data (2)
	burn data (3)
	medial axis data (4)
Enter choice: 1

Data Processing Options
	plot image (1)
	resize tomographic data (2)
	rotate tomographic data (3)
	histogram data, porosity/thresh dependence (4)
	histogram data binormal fit (5)
	generate circular fiducial polygon (6)
	segment data (7)
	image magnification (8)
	image refining by trilinear interpolation (9)
Enter choice: 1

Image format options
	Rasterfile (2D) (1)
	Inventor (3D)   (2)
Enter choice: 1

	Reading raw tomographic data files

Tomographic data slices are contained in
	separate files (slc)
	a single file  (vol)
Enter file type (slc,vol): slc

Recognized tomographic data file types are
	ascii integer          array  (  ai)
	binary integer         array  (  bi)
	swapped binary integer array  ( sbi)
	binary short integer   array  (  bs)
	swapped binary short   array  ( sbs)
	binary unsigned char   array  ( ubc)
	netcdf files                  (  nc)
	netcdf ascii files            (  na)
	punch ascii files             (  pa)
	sun rasterfile ( 8-bit color) ( sr8)
	sun rasterfile (24-bit color) (sr24)
	bmp                           ( bmp)
	tiff file                     (tiff)
Enter data type (ai,bi,sbi,bs,sbs,ubc,nc,na,pa,sr8,sr24,bmp,tiff): sbs

Tomographic file has header? (y,n(dflt)): y
Header size in bytes: 184

    Files assumed to be labelled  basename.ext,
    basename  is limited to 255 characters maximum,
    ext       is a numerical designator lying between 000 and 999
    It is assumed that the files have consecutively numbered extensions
        ie.  000 -> 056,  or   021 -> 049

Enter basename for tomographic file(s): ../tom/fbr
Are file(s) compressed? [y,n]: y
Enter first and last slice of data to use: 1 10
Slice size of data, (nx,ny): 512 512
Select method for determining MIN and MAX values for scaling data
	volume          (v)
	slice           (s)
	slice  adjusted (sa)
Enter choice: sa
Enter minimum counts to determine adjusted values at low and high end
of histogram. Separate values for the minimum counts may be specified
at each end.
	low  end value: 100
	high end value: 100

Fiducial polygon generation
	NONE         (N)
	MANUALLY set (M)
Enter method: M

	MANUAL fiducial boundary calculation

	The bounding curve for each fiducial polygon should be convex in
	the sense that at most 2 points on the bounding curve have the
	same y coordinate.
Enter number of polygons: 1

Are the coordinates of the fiducial polygon(s) stored in a file: y
	Filename of fiducial polygon 1: ./fp_fbr
Reading 168 vertices in ./fp_fbr...

Enter basename for raster file(s): ../tom/fbr_fp
Rasterfile colormap choices
	rainbow   (r)
	greyscale with void     white (gv)
	greyscale with material white (gm)
	pinkscale with void     pale  (pv)
	pinkscale with material pale  (pm)
Enter choice (r,gv(dflt),gm,pv,pm): gv

Merge raster files of tomographic image (y,n(dflt)): n