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Run Stamp  start time       Sat Apr 26 10:31:59 2008
           machine name     3dma.ams.sunysb.edu
           operating system Linux
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Input Data Options
	simulated data (0)
	tomographic data (1)
	segmented data (2)
	burn data (3)
	medial axis data (4)
Enter choice: 2

Data Processing Options
	plot image/surface area computation (1)
	resize data (2)
	disconnected volume distribution (3)
	clean up segmented files (4)
	burn and compute LKC medial axis/surface (5)
	surface area computation (6)
	moment of inertia of disconnected components (7)
	convert data to/from ascii format (8)
	2-point covariance function (9)
	tomographic/segmented data covariance comparison (10)
	set fiducial polygon exterior to grain phase (11)
	overlay segmented and tomographic images (12)
	void space erosion connectivity analysis (13)
	directional erosion connectivity analysis (14)
	seal image volume (15)
	convert to/from segmented slice/volume file formats (16)
	fiber ply thickness (17)
	image magnification (18)
	fiber volume fraction variation (19)
	ply/interply volume distribution (20)
	test marching cubes (21)
Enter choice: 4
Enter basename for input segmented volume file(s): ../seg/fbr
Are file(s) compressed? [y,n]: y

Enter first and last slice of data to use: 1 10

Input data can be inverted to compute burn/medial axis of
grain space rather than void space.
Invert data (y,n(dflt))?: n

Apply morphological closure operation to grain space? (y,n(dflt)): n

Fiducial polygon generation methods
	NONE      (N)
	MANUAL    (M)
	AUTOMATIC (A)
Enter method: M

	MANUAL fiducial boundary calculation

	The bounding curve for each fiducial polygon should be convex in
	the sense that at most 2 points on the bounding curve have the
	same y coordinate.
Enter number of polygons: 1

Are the coordinates of the fiducial polygon(s) stored in a file: y
	Filename of fiducial polygon 1: fp_fbr
Reading 168 vertices in fp_fbr...

Correct for ring artifacts? (y,n(dflt)): n

The material/void boundary can be lightly smoothed.
Available options are
	0) no conversion
or convert those boundary voxels having
	1) exactly one neighbor of the same type
	2) less than a majority of neighbors of the same type
Enter choice (0(dflt),1,2): 0

Isolated clusters of grain and/or pore voxels up to a specifed size
can be assumed to be misidentified and converted to the opposite material type.
Convert isolated grain clusters? (y,n): y
Enter maximum allowed size (number of voxels)
		for convertible isolated grain cluster: 1000
Convert isolated pore  clusters? (y,n): y
Enter maximum allowed size (number of voxels)
		for convertible isolated pore  cluster: 10

Enter basename for output segmented file(s): ../c_seg/fbr
Are file(s) to be compressed? [y,n]: y

Prepare raster files of corrected segmented image (y,n(dflt)): y
Enter basename for raster file(s): ../c_seg/fbr

Merge raster files of segmented image (y,n(dflt)): n