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Run Stamp  start time       Sat Apr 26 13:56:28 2008
           machine name     3dma.ams.sunysb.edu
           operating system Linux
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Input Data Options
	simulated data (0)
	tomographic data (1)
	segmented data (2)
	burn data (3)
	medial axis data (4)
Enter choice: 4

Data Processing Options
	plot MA (1)
	convert MA files to segmented file type (2)
	convert MS files to segmented file type (3)
	histogram and fit pore MA burn data (4)
	embed search tree(s) (5)
	shortest paths (6)
	min cut/max flow (7)
	convert data to/from ascii format (8)
	convert MA list to/from node/path formats (9)
	modify MA (10)
	histogram MA info (11)
	reconstruct fibers (12)
	fiber width by MoI (13)
	fiber width by MoI - simple (14)
	free fiber ends (15)
Enter choice: 11

Specify input medial axis data format
	voxel location list only (v)
	cluster/path format      (cp)
Enter format (v,cp): v

    Files assumed to be labelled  basename.ext,
    basename  is limited to 255 characters maximum,
    ext       is a numerical designator lying between 000 and 999
    It is assumed that the files have consecutively numbered extensions
        ie.  000 -> 056,  or   021 -> 049

Enter basename for Medial structure file(s): ../v_ma/fbr1
Are file(s) compressed? [y,n]: y
Enter basename for burn file(s): ../v_burn/fbr1
Are file(s) compressed? [y,n]: y

Resize information selection.
NOTE, row and column numbers begin from 0

For each slice,
   enter first and last column of data to use (x-dir): 0 69
   enter first and last row of data to use (y-dir): 0 69

enter first and last slice of data to use (z-dir): 1 70

Trim medial structure voxels on volume edges? (y,n(dflt)): y

Merge close clusters? (y,n(dflt)): n

Available debug printout on medial axis (Warning - it can be huge)
	1) paths and clusters
	2) surface remnants only
Enter a list of option numbers or the letters 'a(ll)' or 'n(one)': n

Available analyses on medial axis
	0) histogram of path lengths
	1) histogram of path tortuosities
	2) histogram of branch cluster sizes
	3) histogram of coordination numbers
	4) histogram of paths attached to coord. num. 3 clusters
	5) statistics on coord. num. 3 clusters
	6) histogram of erosion numbers on paths
	7) scatterplot of cluster and path counts for connected MA components
	8) histogram of isolated voxel burn numbers
	9) histogram of branch cluster radii
	M) histogram path moments of inertia/principle axes
	T) histogram path throat characteristics
Enter a list of options or the letter 'a(ll)': 0

Enter data identifier for all histograms: void

Enter voxel length in physical units: 7

Enter basename for path length distribution file(s): ../v_results/plen