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Run Stamp  start time       Sat Apr 26 11:54:04 2008
           machine name     3dma.ams.sunysb.edu
           operating system Linux
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Input Data Options
	simulated data (0)
	tomographic data (1)
	segmented data (2)
	burn data (3)
	medial axis data (4)
Enter choice: 4

Data Processing Options
	plot MA (1)
	convert MA files to segmented file type (2)
	convert MS files to segmented file type (3)
	histogram and fit pore MA burn data (4)
	embed search tree(s) (5)
	shortest paths (6)
	min cut/max flow (7)
	convert data to/from ascii format (8)
	convert MA list to/from node/path formats (9)
	modify MA (10)
	histogram MA info (11)
	reconstruct fibers (12)
	fiber width by MoI (13)
	fiber width by MoI - simple (14)
	free fiber ends (15)
Enter choice: 12

Specify input medial axis data format
	voxel location list only (v)
	cluster/path format      (cp)
Enter format (v,cp): cp

Enter basename for singlet loc/burn file(s): ../ma_t/cp_sngl
Enter basename for cluster/path loc/burn file(s): ../ma_t/cp_loc
Enter basename for cluster/path structure file(s): ../ma_t/cp_struct
Are file(s) compressed? [y,n]: y

Merge close clusters? (y,n(dflt)): y
Select the criterion for merging clusters. Two clusters
will be merged if they are separated by a path
	a) having length (measured in voxels) less than the
	maximun burn number at either end of the path + 2
	b) having minimum interior burn number greater than
	or equal to the minimum burn number at either end
	c) having length (measured in voxels) less than
	a value specified by the user.

Specify criterion (a(dflt),b,c): a

Available debug printout on medial axis (Warning - it can be huge)
	1) paths and clusters
	2) surface remnants only
Enter a list of option numbers or the letters 'a(ll)' or 'n(one)': n

Enter maximum kink angle (degrees) a fiber can sustain: 130
Enter basename for fiber histogram file(s): ../results/fbr

Enter data identifier for fiber histograms: fbr

Enter voxel length in physical units: 7

Delete small fibers and correct fiber lengths for medial axes angular effects? (y,n(dflt)): n

Restrict the length-range of fiber segments that are used for the distributions? (y,n(dflt)): n
Visualize identified fibers? (y,n(dflt)): n
Consider only fibers composed of clusters and their
attached paths? (i.e. ignore leaf-leaf fibers) (y,n(dflt)): n
Create a length-ratio table? (y,n(dflt)): n

Set binning for tortuosity histogram
	number of bins (c)
	bin width      (w)
Enter choice: w

Specify bin width to be used: 0.05