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Run Stamp  start time       Sat Apr 26 14:14:16 2008
           machine name     3dma.ams.sunysb.edu
           operating system Linux
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Input Data Options
	simulated data (0)
	tomographic data (1)
	segmented data (2)
	burn data (3)
	medial axis data (4)
Enter choice: 4

Data Processing Options
	plot MA (1)
	convert MA files to segmented file type (2)
	convert MS files to segmented file type (3)
	histogram and fit pore MA burn data (4)
	embed search tree(s) (5)
	shortest paths (6)
	min cut/max flow (7)
	convert data to/from ascii format (8)
	convert MA list to/from node/path formats (9)
	modify MA (10)
	histogram MA info (11)
	reconstruct fibers (12)
	fiber width by MoI (13)
	fiber width by MoI - simple (14)
	free fiber ends (15)
Enter choice: 6

    Files assumed to be labelled  basename.ext,
    basename  is limited to 255 characters maximum,
    ext       is a numerical designator lying between 000 and 999
    It is assumed that the files have consecutively numbered extensions
        ie.  000 -> 056,  or   021 -> 049

Enter basename for voxel location list file(s): ../v_ma_t/fbr1
Are file(s) compressed? [y,n]: y

Resize information selection.
NOTE, row and column numbers begin from 0

For each slice,
   enter first and last column of data to use (x-dir): 0 69
   enter first and last row of data to use (y-dir): 0 69

enter first and last slice of data to use (z-dir): 1 70

Do you want to trim the data? (y,n(dflt)): n
Do you want 6 or 26 connectivity: 26

Dijkstra shortest path computations
Labelling of cube faces 


	    		      /(6)   
	            (1)|     /       
	            ___|____/__      
	           /   |      /|   1st slice
	          /    |     / |     
	         /          / /|     
	  X     /__________/ / |     
	  ------|         | /------  
	  (3)   |_________|/  /  (4) 
	        |         |  /       
	        |   /     | /       
	        |__/______|/       last slice 
	          /    |             
	      Y  /     |             
	       (5)     |(2)          
	             Z |             


Enter start face (1 -> 6): 1
Enter end   face (1 -> 6, except 1): 2

By default all nodes on starting face are used in the Dijkstra calculation.
If only a subrange of nodes are to be used, enter `r': 

Viewing options
	Print information on NBHD_LIST (l)
	Print Geomview data for viewing (g)
	Print jgraph data for viewing (2-D data only) (j)
	Print as medial axis data file (r)
	None of above (n)
Enter choice? (l,g,v,j,r,n): g

Request magnification of the view of the shortest paths in the Z direction? (y,n(dflt)): n
Enter basename for writing absolute shortest path for geomview file(s): ../v_plots/vtort_z_abs
Enter basename for writing all shortest paths for geomview file(s): ../v_plots/vtort_z_all

	Two files will be output for tort. distribution, in THE FIRST
	shortest paths' lengths(for each starting node) will be divided
	with the Euclidean length of the path and in THE SECOND  with 
	face-to-face length.
Enter basename for face-to-face tortuosity distribution 1 file(s): ../v_results/vtort_z
Enter basename for face-to-face tortuosity distribution 2 file(s): ../v_results/vtort_f2f_z
Enter data identifier for all histograms: void, z-dir

Set binning for tortuosity histogram
	number of bins (c)
	bin width      (w)
Enter choice: w

tortuosity data ranges from 1.47426 to 2.56652
Specify bin width to be used: 0.02

Set binning for tortuosity histogram
	number of bins (c)
	bin width      (w)
Enter choice: w

Specify bin width to be used: 0.02