Input Data Options
	special purpose data requiring pre-processing (0)
	tomographic data (1)
	segmented data (2)
	burn data (3)
	medial axis data (4)
	throat data (5)
	fluid data (6)
Enter choice: 4

Data Processing Options
	plot MA (1)
	plot MA with MS (2)
	convert MS files to segmented file type (3)
	histogram and fit pore MA burn data (4)
	embed search tree(s) (5)
	shortest paths (6)
	min cut/max flow (7)
	construct fish (8)
	convert data to/from ascii format (9)
	convert MA list to/from node/path formats (10)
	modify MA (11)
	histogram MA info (12)
	throat calculation (13)
	identify fibers (14)
	convert to graph format (15)
	construct neuron (16)
	reconstruct burn layers (17)
	isolate neuron soma/dendrite structures (18)
Enter choice: 1

Image format options
	SUN rasterfile (1)
	Open_GL        (2)
	IBM  Explorer  (3)
	Iris Explorer  (4)
	Inventor       (5)
	Bio-Rad        (6)
Enter choice: 1

Specify input medial axis data format
	voxel location list only (v)
	cluster/path format      (cp)
Enter format (v,cp): cp


Enter basename for singlet loc/burn files: ../ma_t/cp_sngl
Enter basename for cluster/path loc/burn files: ../ma_t/cp_loc
Are files compressed? [y,n]: y


Enter beginning and ending file numbers (zs,ze) used to produce the medial axis: 1 100

Resize information selection.
NOTE, row and column numbers begin from 0

For each slice,
   enter first and last column of data to use (x-dir): 0 99
   enter first and last row of data to use (y-dir): 0 99

enter first and last slice of data to use (z-dir): 1 100

Trim medial axis voxels on volume edges? (y,n(dflt)): n
Add grains? (y,n): y

Enter basename for burn files: ../burn/oil
Are files compressed? [y,n]: y
Enter basename for pma raster files: ../ma_t/oil

Magnify the image (y,n(dflt)): n

Merge raster files of pma image (y,n(dflt)): n