Input Data Options
	tomographic data (1)
	segmented data (2)
	burn data (3)
	medial axis data (4)
	throat data (5)
	pore-throat network data (6)
	fluid data (7)
	lattice Boltzmann simulation (8)
Enter choice: 7

Data Processing Options
	histogram pore space (1)
	fluid segmentation (2)
	fluid sat distribution (3)
	fluid sat transition matrix (4)
	fluid blob distribution (5)
	saturation gradients (6)
	subvolume fluid saturation (7)
	fluids visualization/interface area computation (8)
	comparative rasterplot (9)
	fluid blob pore/throat span (10)
	fluid blob surfaces (11)
	clean up fluid seg data (12)
	(residual) fluid local depth distribution (13)
Enter choice: 1

	Inputting raw tomographic data files


Tomographic data slices are contained in
	separate files (slc)
	a single file  (vol)
Enter file type (slc,vol): slc

Recognized tomographic data file types are
	ascii integer          array  (  ai)
	binary integer         array  (  bi)
	swapped binary integer array  ( sbi)
	binary short integer   array  (  bs)
	swapped binary short   array  ( sbs)
	binary unsigned char   array  ( ubc)
	netcdf files                  (  nc)
	netcdf ascii files            (  na)
	Kimberly Clark data           (  kc)
	punch ascii files             (  pa)
	sun rasterfile ( 8-bit color) ( sr8)
	sun rasterfile (24-bit color) (sr24)
	bmp                           ( bmp)
	tiff file                     (tiff)
Enter data type (ai,bi,sbi,bs,sbs,ubc,nc,na,kc,pa,sr8,sr24,bmp,tiff): ubc

Tomographic file has header? (y,n(dflt)): n

    Files assumed to be labelled  basename.ext,
    basename  is limited to 255 characters maximum,
    ext       is a numerical designator lying between 000 and 999
    It is assumed that the files have consecutively numbered extensions
        ie.  000 -> 056,  or   021 -> 049


Enter basename for tomographic set 2 file(s): ../tomog/sor
Are file(s) compressed? [y,n]: y


Enter basename for segmented set 1 file(s): ../../sw/c_seg/sw
Are file(s) compressed? [y,n]: y

Enter first and last slice of data to use: 1 256
Slice size of data, (nx,ny): 256 256


A fiducial polygon may be applied to tomographic set 1
Fiducial polygon generation methods
	NONE      (N)
	MANUAL    (M)
	AUTOMATIC (A)
Enter method: N

Median filter data? (y,n(dflt)): y

Enter basename for pore space histogram file(s): ../results/pore_hist
Enter title for histogram: sor, pore space
Default histogram contains 128 bins. Change number of bins? (y,n(dflt)): y
Enter number of bins: 256

Enter min and max data values to be histogrammed(min,max): 0 255