Main Menu 4: Analyses Available on Medial Axis Data Set

• case4.1: Generate Images of the Medial Axis/Surface
• case4.1_ras: SUN Rasterfile Format
• case4.1_ras/case4.1a_ras.in: SUN Rasterfile Format
• case4.1_ras/case4.1b_ras.in: SUN Rasterfile Format: Trim Axis, Add Grains
• case4.1_ras/case4.1c_ras.in: SUN Rasterfile Format: Trim Axis
• case4.1_BR: Bio-Rad MRC-600 Format
• case4.1_dx: IBM Explorer Format
• case4.1_dx/case4.1_dx.in: IBM Explorer Format - Image Entire Volume
• case4.1_dx/case4.1a_dx.in: IBM Explorer Format - Image SubVolume
• case4.1_expl: Iris Explorer Format
• case4.1_expl/case4.1_expl.in: Iris Explorer Format - Image Medial Axis
• case4.1_expl/case4.1s_expl.in: Iris Explorer Format - Image Medial Surface
• case4.1_gl: Open GL Format
• case4.1_gl/case4.1_gl.in: Open GL Format - Image Entire Volume
• case4.1_gl/case4.1a_gl.in: Open GL Format - Image SubVolume
• case4.1_iv: Inventor Format
• case4.1_iv/case4.1_iv_a.in: Inventor Format - Image Volume
• case4.1_iv/case4.1_iv_b.in: Inventor Format - Image Volume - offset origin
• case4.2: Plot Medial Axis on Medial Surface - Iris Explorer Format
• case4.3: Convert Medial Surface Files to Segmented File Type
• case4.4: Histogram burn data for medial axis voxels only
• case4.4/case4.4.ntrim.nper: No Axis Trimming
• case4.4/case4.4.ntrim.per: No Axis Trimming, y-axis as percentage
• case4.4/case4.4.trim.nper: Axis Trimming
• case4.4/case4.4.trim.per: Axis Trimming, y-axis as percentage
• case4.5: Embed Search Tree, Generate Histogram
• case4.5/case4.5.ntrim: No Axis Trimming
• case4.5/case4.5.trim: Axis Trimming
• case4.6: Compute shortest path tortuosity distribution
• case4.6/case4.6_34.in: Between faces 3 and 4 (x direction)
• case4.6/case4.6_36.in: Between faces 3 and 6 (adjoining x-y faces)
• case4.6/case4.6_56.in: Between faces 5 and 6 (y direction)
• case4.7: Min Cut/Max Flow - Under Development
• case4.8: Cluster Analysis - Test file not available
• case4.9: Convert Medial Axis Data Files to/from ASCII
• case4.9/case4.9.in: Convert Binary Files to ASCII
• case4.10: Convert between Medial Axis Data Formats
• case4.10cp/case4.10cp.in: voxel-list to cluster-path
• case4.10g/case4.10g.in: voxel-list to graph-node
• case4.11: Modify Medial Axis
• case4.11v/case4.11v.in: output voxel-list format
• case4.11cp/case4.11cp.in: output cluster-path format
• case4.11g/case4.11g.in: output graph-node format
• case4.12: Histogram Medial Axis Statistics
• case4.12v/case4.12v.in: Input is voxel-list format
• case4.12cp/case4.12cp.in: Input is cluster-path format
• case4.13: Compute Throat Size Distribution
• case4.13/case4.13_3sph.in: Use 3 sphere test data set
• case4.13/case4.13_nl.in: Use 5 sphere test data set
• case4.14: Identify Fibers
• case4.15: Convert Cluster-Path Format to Graph-Node
• case4.16: Construct Neuron - Under development
• case4.17: Reconstruct Burn Layers - Under development
• case4.18: Isolate Neuron Soma/Dendrite Structures - Under development