next up previous contents
Next: case4.1_gl: Open GL Format Up: Main Menu 4: Analyses Previous: case4.1_expl/case4.1_expl.in: Iris Explorer Format

case4.1_expl/case4.1s_expl.in: Iris Explorer Format - Image Medial Surface


  

Input Data Options special purpose data requiring pre-processing (0) tomographic data (1) segmented data (2) burn data (3) medial axis data (4) throat data (5) Enter choice: 4

Data Processing Options plot MA (1) plot MA with MS (2) convert MS files to segmented file type (3) histogram and fit pore MA burn data (4) embed search tree(s) (5) shortest paths (6) min cut/max flow (7) convert data to/from ascii format (9) convert MA list to/from node/path formats (10) modify MA (11) histogram MA info (12) throat calculation (13) identify fibers (14) convert to graph format (15) construct neuron (16) reconstruct burn layers (17) isolate neuron soma/dendrite structures (18) Enter choice: 1

Image format options SUN rasterfile (1) Open_GL (2) IBM Explorer (3) Iris Explorer (4) Bio-Rad (6) Inventor (7) Enter choice: 4

Files assumed to be labelled basename.ext, basename is limited to 255 characters maximum, ext is a numerical designator lying between 000 and 999 It is assumed that the files have consecutively numbered extensions ie. 000 -> 056, or 021 -> 049

Enter basename for Medial structure files: ../../Examples/case3.4/lkc_ms Are files compressed? [y,n]: y

Resize information selection. NOTE, row and column numbers begin from 0

For each slice, enter first and last column of data to use (x-dir): 0 399 enter first and last row of data to use (y-dir): 0 399

enter first and last slice of data to use (z-dir): 1 5

Trim medial structure voxels on volume edges? (y,n(dflt)): y Enter basename for burn files: ../../Examples/case2.2/burn_a Are files compressed? [y,n]: y

Fiducial polygon generation NONE (N) MANUALLY set (M) Enter method: N

Enter basename for iris explorer output files: ms




Brent Lindquist
Thu Sep 30 12:33:54 EDT 1999