****************************************************
Run Stamp  start time       Fri Jun 25 15:07:35 2004
           machine name     bgc133
           operating system Linux
           number of nodes 6
****************************************************

Type debug to Turn On Debugging: debug
Specify Debugging Destination, screen or file: screen
List Functions to Debug - or all -  end  ends list
Names following  all  will not be debugged - end ends
	: new_bdry
	: end
Enter NX: 60
Enter NY: 60
Enter NZ: 60
Enter dx: 0.5
Enter dy: 0.5
Enter dz: 0.5
Enter dt: 0.001
Enter final time: 64
Enter the frequency of states dump for restart: 10000
Enter the frequency of plotting: 1000
Enter intracellular conductivity, (si_x,si_y,si_z): 1 0.1 0.1
Enter extracellular conductivity, (se_x,se_y,se_z): 1 0.4 0.4
Enter the fiber direction of the first layer in degree: 180
Enter the rate of the angle change between layers: 2
Three ionic models are available
	FN       (f)
	FHN-OMER (o)
	3V-SIM   (3)
Enter a model (f(dflt),o,3): 3
Enter the initial value for v: 0.9
Enter the initial value for w: 0.4
Enter the following 13 parameters; notations follow
Flavio's 2002 Chaos paper
Enter tau_vp: 3.33
Enter tau_v1m: 19.6
Enter tau_v2m: 1000
Enter tau_wp: 667
Enter tau_wm: 11
Enter tau_d: 0.37
Enter tau_o: 8.3
Enter tau_r: 50
Enter tau_si: 45
Enter k: 10
Enter Vcsi: 0.85
Enter Vc: 0.13
Enter Vv: 0.055
Three problems are available
	Monodomain        (m)
	1d Bidomain       (1)
	2d or 3d Bidomain (b)
Enter a problem (m,1,b(dflt)): b
Enter the resistance: 1
Enter the surface volume ratio: 1
Four solution methods are available.
	Crank_Nicolson (c)
	Semi_Implicit  (i)
	Split_Dense    (s)
	Split_ADI      (t)
Enter a method (c,i,s or t): t
Enter y if you want to turn off bidomain: n
Choose an initial condition.
	Plane Wave starting from left        (p)
	Radial wave starting from a corner   (c)
	Radial wave starting from the center (s)
	Read from a file                     (f)
Enter the choice (p,c,s(default), or f): f
Enter the file name from which you want to read: out/fila2d1_plot/states.ts0018000
Do you want to reverse the orientation of the file, Enter y or n(default): n
When the dimension of the init_file is 2, and the simulation dimension is 3,
it needs to know how to fill the 3d volume with the initial wave.
	Stack along z axis           (z)
	Stack along y axis           (y)
	Dimension of init wave is 3. (3)
Enter the choice (z, y, or 3(default)): z
Choose a method for stimulation.
	Cutting half          (h)
	Stimulting the center (c)
	No stimulus           (n)
Enter a method for stimulation (h, c(default), or n): n
t = 0, j = 0
t = 0.1, j = 100
t = 0.2, j = 200
t = 0.3, j = 300
t = 0.4, j = 400
t = 0.5, j = 500
t = 0.6, j = 600
t = 0.7, j = 700
t = 0.8, j = 800
t = 0.9, j = 900
t = 1, j = 1000
t = 1.1, j = 1100
t = 1.2, j = 1200
t = 1.3, j = 1300
t = 1.4, j = 1400
t = 1.5, j = 1500
t = 1.6, j = 1600
t = 1.7, j = 1700
t = 1.8, j = 1800
t = 1.9, j = 1900
t = 2, j = 2000
t = 2.1, j = 2100
t = 2.2, j = 2200
t = 2.3, j = 2300
t = 2.4, j = 2400
t = 2.5, j = 2500
t = 2.6, j = 2600
t = 2.7, j = 2700
t = 2.8, j = 2800
t = 2.9, j = 2900
t = 3, j = 3000
t = 3.1, j = 3100
t = 3.2, j = 3200
t = 3.3, j = 3300
t = 3.4, j = 3400
t = 3.5, j = 3500
t = 3.6, j = 3600
t = 3.7, j = 3700
t = 3.8, j = 3800
t = 3.9, j = 3900
t = 4, j = 4000
t = 4.1, j = 4100
t = 4.2, j = 4200
t = 4.3, j = 4300
t = 4.4, j = 4400
t = 4.5, j = 4500
t = 4.6, j = 4600
t = 4.7, j = 4700
t = 4.8, j = 4800
t = 4.9, j = 4900
t = 5, j = 5000
t = 5.1, j = 5100
t = 5.2, j = 5200
t = 5.3, j = 5300
t = 5.4, j = 5400
t = 5.5, j = 5500
t = 5.6, j = 5600
t = 5.7, j = 5700
t = 5.8, j = 5800
t = 5.9, j = 5900
t = 6, j = 6000
t = 6.1, j = 6100
t = 6.2, j = 6200
t = 6.3, j = 6300
t = 6.4, j = 6400
t = 6.5, j = 6500
t = 6.6, j = 6600
t = 6.7, j = 6700
t = 6.8, j = 6800
t = 6.9, j = 6900
t = 7, j = 7000
t = 7.1, j = 7100
t = 7.2, j = 7200
t = 7.3, j = 7300
t = 7.4, j = 7400
t = 7.5, j = 7500
t = 7.6, j = 7600
t = 7.7, j = 7700
t = 7.8, j = 7800
t = 7.9, j = 7900
t = 8, j = 8000
t = 8.1, j = 8100
t = 8.2, j = 8200
t = 8.3, j = 8300
t = 8.4, j = 8400
t = 8.5, j = 8500
t = 8.6, j = 8600
t = 8.7, j = 8700
t = 8.8, j = 8800
t = 8.9, j = 8900
t = 9, j = 9000
t = 9.1, j = 9100
t = 9.2, j = 9200
t = 9.3, j = 9300
t = 9.4, j = 9400
t = 9.5, j = 9500
t = 9.6, j = 9600
t = 9.7, j = 9700
t = 9.8, j = 9800
t = 9.9, j = 9900
t = 10, j = 10000
t = 10.1, j = 10100
t = 10.2, j = 10200
t = 10.3, j = 10300
t = 10.4, j = 10400
t = 10.5, j = 10500
t = 10.6, j = 10600
t = 10.7, j = 10700
t = 10.8, j = 10800
t = 10.9, j = 10900
t = 11, j = 11000
t = 11.1, j = 11100
t = 11.2, j = 11200
t = 11.3, j = 11300
t = 11.4, j = 11400
t = 11.5, j = 11500
t = 11.6, j = 11600
t = 11.7, j = 11700
t = 11.8, j = 11800
t = 11.9, j = 11900
t = 12, j = 12000
t = 12.1, j = 12100
t = 12.2, j = 12200
t = 12.3, j = 12300
t = 12.4, j = 12400
t = 12.5, j = 12500
t = 12.6, j = 12600
t = 12.7, j = 12700
t = 12.8, j = 12800
t = 12.9, j = 12900
t = 13, j = 13000
t = 13.1, j = 13100
t = 13.2, j = 13200
t = 13.3, j = 13300
t = 13.4, j = 13400
t = 13.5, j = 13500
t = 13.6, j = 13600
t = 13.7, j = 13700
t = 13.8, j = 13800
t = 13.9, j = 13900
t = 14, j = 14000
t = 14.1, j = 14100
t = 14.2, j = 14200
t = 14.3, j = 14300
t = 14.4, j = 14400
t = 14.5, j = 14500
t = 14.6, j = 14600
t = 14.7, j = 14700
t = 14.8, j = 14800
t = 14.9, j = 14900
t = 15, j = 15000
t = 15.1, j = 15100
t = 15.2, j = 15200
t = 15.3, j = 15300
t = 15.4, j = 15400
t = 15.5, j = 15500
t = 15.6, j = 15600
t = 15.7, j = 15700
t = 15.8, j = 15800
t = 15.9, j = 15900
t = 16, j = 16000
t = 16.1, j = 16100
t = 16.2, j = 16200
t = 16.3, j = 16300
t = 16.4, j = 16400
t = 16.5, j = 16500
t = 16.6, j = 16600
t = 16.7, j = 16700
t = 16.8, j = 16800
t = 16.9, j = 16900
t = 17, j = 17000
t = 17.1, j = 17100
t = 17.2, j = 17200
t = 17.3, j = 17300
t = 17.4, j = 17400
t = 17.5, j = 17500
t = 17.6, j = 17600
t = 17.7, j = 17700
t = 17.8, j = 17800
t = 17.9, j = 17900
t = 18, j = 18000
t = 18.1, j = 18100
t = 18.2, j = 18200
t = 18.3, j = 18300
t = 18.4, j = 18400
t = 18.5, j = 18500
t = 18.6, j = 18600
t = 18.7, j = 18700
t = 18.8, j = 18800
t = 18.9, j = 18900
t = 19, j = 19000
t = 19.1, j = 19100
t = 19.2, j = 19200
t = 19.3, j = 19300
t = 19.4, j = 19400
t = 19.5, j = 19500
t = 19.6, j = 19600
t = 19.7, j = 19700
t = 19.8, j = 19800
t = 19.9, j = 19900
t = 20, j = 20000
t = 20.1, j = 20100
t = 20.2, j = 20200
t = 20.3, j = 20300
t = 20.4, j = 20400
t = 20.5, j = 20500
t = 20.6, j = 20600
t = 20.7, j = 20700
t = 20.8, j = 20800
t = 20.9, j = 20900
t = 21, j = 21000
t = 21.1, j = 21100
t = 21.2, j = 21200
t = 21.3, j = 21300
t = 21.4, j = 21400
t = 21.5, j = 21500
t = 21.6, j = 21600
t = 21.7, j = 21700
t = 21.8, j = 21800
t = 21.9, j = 21900
t = 22, j = 22000
t = 22.1, j = 22100
t = 22.2, j = 22200
t = 22.3, j = 22300
t = 22.4, j = 22400
t = 22.5, j = 22500
t = 22.6, j = 22600
t = 22.7, j = 22700
t = 22.8, j = 22800
t = 22.9, j = 22900
t = 23, j = 23000
t = 23.1, j = 23100
t = 23.2, j = 23200
t = 23.3, j = 23300
t = 23.4, j = 23400
t = 23.5, j = 23500
t = 23.6, j = 23600
t = 23.7, j = 23700
t = 23.8, j = 23800
t = 23.9, j = 23900
t = 24, j = 24000
t = 24.1, j = 24100
t = 24.2, j = 24200
t = 24.3, j = 24300
t = 24.4, j = 24400
t = 24.5, j = 24500
t = 24.6, j = 24600
t = 24.7, j = 24700
t = 24.8, j = 24800
t = 24.9, j = 24900
t = 25, j = 25000
t = 25.1, j = 25100
t = 25.2, j = 25200
t = 25.3, j = 25300
t = 25.4, j = 25400
t = 25.5, j = 25500
t = 25.6, j = 25600
t = 25.7, j = 25700
t = 25.8, j = 25800
t = 25.9, j = 25900
t = 26, j = 26000
t = 26.1, j = 26100
t = 26.2, j = 26200
t = 26.3, j = 26300
t = 26.4, j = 26400
t = 26.5, j = 26500
t = 26.6, j = 26600
t = 26.7, j = 26700
t = 26.8, j = 26800
t = 26.9, j = 26900
t = 27, j = 27000
t = 27.1, j = 27100
t = 27.2, j = 27200
t = 27.3, j = 27300
t = 27.4, j = 27400
t = 27.5, j = 27500
t = 27.6, j = 27600
t = 27.7, j = 27700
t = 27.8, j = 27800
t = 27.9, j = 27900
t = 28, j = 28000
t = 28.1, j = 28100
t = 28.2, j = 28200
t = 28.3, j = 28300
t = 28.4, j = 28400
t = 28.5, j = 28500
t = 28.6, j = 28600
t = 28.7, j = 28700
t = 28.8, j = 28800
t = 28.9, j = 28900
t = 29, j = 29000
t = 29.1, j = 29100
t = 29.2, j = 29200
t = 29.3, j = 29300
t = 29.4, j = 29400
t = 29.5, j = 29500
t = 29.6, j = 29600
t = 29.7, j = 29700
t = 29.8, j = 29800
t = 29.9, j = 29900
t = 30, j = 30000
t = 30.1, j = 30100
t = 30.2, j = 30200
t = 30.3, j = 30300
t = 30.4, j = 30400
t = 30.5, j = 30500
t = 30.6, j = 30600
t = 30.7, j = 30700
t = 30.8, j = 30800
t = 30.9, j = 30900
t = 31, j = 31000
t = 31.1, j = 31100
t = 31.2, j = 31200
t = 31.3, j = 31300
t = 31.4, j = 31400
t = 31.5, j = 31500
t = 31.6, j = 31600
t = 31.7, j = 31700
t = 31.8, j = 31800
t = 31.9, j = 31900
t = 32, j = 32000
t = 32.1, j = 32100
t = 32.2, j = 32200
t = 32.3, j = 32300
t = 32.4, j = 32400
t = 32.5, j = 32500
t = 32.6, j = 32600
t = 32.7, j = 32700
t = 32.8, j = 32800
t = 32.9, j = 32900
t = 33, j = 33000
t = 33.1, j = 33100
t = 33.2, j = 33200
t = 33.3, j = 33300
t = 33.4, j = 33400
t = 33.5, j = 33500
t = 33.6, j = 33600
t = 33.7, j = 33700
t = 33.8, j = 33800
t = 33.9, j = 33900
t = 34, j = 34000
t = 34.1, j = 34100
t = 34.2, j = 34200
t = 34.3, j = 34300
t = 34.4, j = 34400
t = 34.5, j = 34500
t = 34.6, j = 34600
t = 34.7, j = 34700
t = 34.8, j = 34800
t = 34.9, j = 34900
t = 35, j = 35000
t = 35.1, j = 35100
t = 35.2, j = 35200
t = 35.3, j = 35300
t = 35.4, j = 35400
t = 35.5, j = 35500
t = 35.6, j = 35600
t = 35.7, j = 35700
t = 35.8, j = 35800
t = 35.9, j = 35900
t = 36, j = 36000
t = 36.1, j = 36100
t = 36.2, j = 36200
t = 36.3, j = 36300
t = 36.4, j = 36400
t = 36.5, j = 36500
t = 36.6, j = 36600
t = 36.7, j = 36700
t = 36.8, j = 36800
t = 36.9, j = 36900
t = 37, j = 37000
t = 37.1, j = 37100
t = 37.2, j = 37200
t = 37.3, j = 37300
t = 37.4, j = 37400
t = 37.5, j = 37500
t = 37.6, j = 37600
t = 37.7, j = 37700
t = 37.8, j = 37800
t = 37.9, j = 37900
t = 38, j = 38000
t = 38.1, j = 38100
t = 38.2, j = 38200
t = 38.3, j = 38300
t = 38.4, j = 38400
t = 38.5, j = 38500
t = 38.6, j = 38600
t = 38.7, j = 38700
t = 38.8, j = 38800
t = 38.9, j = 38900
t = 39, j = 39000
t = 39.1, j = 39100
t = 39.2, j = 39200
t = 39.3, j = 39300
t = 39.4, j = 39400
t = 39.5, j = 39500
t = 39.6, j = 39600
t = 39.7, j = 39700
t = 39.8, j = 39800
t = 39.9, j = 39900
t = 40, j = 40000
t = 40.1, j = 40100
t = 40.2, j = 40200
t = 40.3, j = 40300
t = 40.4, j = 40400
t = 40.5, j = 40500
t = 40.6, j = 40600
t = 40.7, j = 40700
t = 40.8, j = 40800
t = 40.9, j = 40900
t = 41, j = 41000
t = 41.1, j = 41100
t = 41.2, j = 41200
t = 41.3, j = 41300
t = 41.4, j = 41400
t = 41.5, j = 41500
t = 41.6, j = 41600
t = 41.7, j = 41700
t = 41.8, j = 41800
t = 41.9, j = 41900
t = 42, j = 42000
t = 42.1, j = 42100
t = 42.2, j = 42200
t = 42.3, j = 42300
t = 42.4, j = 42400
t = 42.5, j = 42500
t = 42.6, j = 42600
t = 42.7, j = 42700
t = 42.8, j = 42800
t = 42.9, j = 42900
t = 43, j = 43000
t = 43.1, j = 43100
t = 43.2, j = 43200
t = 43.3, j = 43300
t = 43.4, j = 43400
t = 43.5, j = 43500
t = 43.6, j = 43600
t = 43.7, j = 43700
t = 43.8, j = 43800
t = 43.9, j = 43900
t = 44, j = 44000
t = 44.1, j = 44100
t = 44.2, j = 44200
t = 44.3, j = 44300
t = 44.4, j = 44400
t = 44.5, j = 44500
t = 44.6, j = 44600
t = 44.7, j = 44700
t = 44.8, j = 44800
t = 44.9, j = 44900
t = 45, j = 45000
t = 45.1, j = 45100
t = 45.2, j = 45200
t = 45.3, j = 45300
t = 45.4, j = 45400
t = 45.5, j = 45500
t = 45.6, j = 45600
t = 45.7, j = 45700
t = 45.8, j = 45800
t = 45.9, j = 45900
t = 46, j = 46000
t = 46.1, j = 46100
t = 46.2, j = 46200
t = 46.3, j = 46300
t = 46.4, j = 46400
t = 46.5, j = 46500
t = 46.6, j = 46600
t = 46.7, j = 46700
t = 46.8, j = 46800
t = 46.9, j = 46900
t = 47, j = 47000
t = 47.1, j = 47100
t = 47.2, j = 47200
t = 47.3, j = 47300
t = 47.4, j = 47400
t = 47.5, j = 47500
t = 47.6, j = 47600
t = 47.7, j = 47700
t = 47.8, j = 47800
t = 47.9, j = 47900
t = 48, j = 48000
t = 48.1, j = 48100
t = 48.2, j = 48200
t = 48.3, j = 48300
t = 48.4, j = 48400
t = 48.5, j = 48500
t = 48.6, j = 48600
t = 48.7, j = 48700
t = 48.8, j = 48800
t = 48.9, j = 48900
t = 49, j = 49000
t = 49.1, j = 49100
t = 49.2, j = 49200
t = 49.3, j = 49300
t = 49.4, j = 49400
t = 49.5, j = 49500
t = 49.6, j = 49600
t = 49.7, j = 49700
t = 49.8, j = 49800
t = 49.9, j = 49900
t = 50, j = 50000
t = 50.1, j = 50100
t = 50.2, j = 50200
t = 50.3, j = 50300
t = 50.4, j = 50400
t = 50.5, j = 50500
t = 50.6, j = 50600
t = 50.7, j = 50700
t = 50.8, j = 50800
t = 50.9, j = 50900
t = 51, j = 51000
t = 51.1, j = 51100
t = 51.2, j = 51200
t = 51.3, j = 51300
t = 51.4, j = 51400
t = 51.5, j = 51500
t = 51.6, j = 51600
t = 51.7, j = 51700
t = 51.8, j = 51800
t = 51.9, j = 51900
t = 52, j = 52000
t = 52.1, j = 52100
t = 52.2, j = 52200
t = 52.3, j = 52300
t = 52.4, j = 52400
t = 52.5, j = 52500
t = 52.6, j = 52600
t = 52.7, j = 52700
t = 52.8, j = 52800
t = 52.9, j = 52900
t = 53, j = 53000
t = 53.1, j = 53100
t = 53.2, j = 53200
t = 53.3, j = 53300
t = 53.4, j = 53400
t = 53.5, j = 53500
t = 53.6, j = 53600
t = 53.7, j = 53700
t = 53.8, j = 53800
t = 53.9, j = 53900
t = 54, j = 54000
t = 54.1, j = 54100
t = 54.2, j = 54200
t = 54.3, j = 54300
t = 54.4, j = 54400
t = 54.5, j = 54500
t = 54.6, j = 54600
t = 54.7, j = 54700
t = 54.8, j = 54800
t = 54.9, j = 54900
t = 55, j = 55000
t = 55.1, j = 55100
t = 55.2, j = 55200
t = 55.3, j = 55300
t = 55.4, j = 55400
t = 55.5, j = 55500
t = 55.6, j = 55600
t = 55.7, j = 55700
t = 55.8, j = 55800
t = 55.9, j = 55900
t = 56, j = 56000
t = 56.1, j = 56100
t = 56.2, j = 56200
t = 56.3, j = 56300
t = 56.4, j = 56400
t = 56.5, j = 56500
t = 56.6, j = 56600
t = 56.7, j = 56700
t = 56.8, j = 56800
t = 56.9, j = 56900
t = 57, j = 57000
t = 57.1, j = 57100
t = 57.2, j = 57200
t = 57.3, j = 57300
t = 57.4, j = 57400
t = 57.5, j = 57500
t = 57.6, j = 57600
t = 57.7, j = 57700
t = 57.8, j = 57800
t = 57.9, j = 57900
t = 58, j = 58000
t = 58.1, j = 58100
t = 58.2, j = 58200
t = 58.3, j = 58300
t = 58.4, j = 58400
t = 58.5, j = 58500
t = 58.6, j = 58600
t = 58.7, j = 58700
t = 58.8, j = 58800
t = 58.9, j = 58900
t = 59, j = 59000
t = 59.1, j = 59100
t = 59.2, j = 59200
t = 59.3, j = 59300
t = 59.4, j = 59400
t = 59.5, j = 59500
t = 59.6, j = 59600
t = 59.7, j = 59700
t = 59.8, j = 59800
t = 59.9, j = 59900
t = 60, j = 60000
t = 60.1, j = 60100
t = 60.2, j = 60200
t = 60.3, j = 60300
t = 60.4, j = 60400
t = 60.5, j = 60500
t = 60.6, j = 60600
t = 60.7, j = 60700
t = 60.8, j = 60800
t = 60.9, j = 60900
t = 61, j = 61000
t = 61.1, j = 61100
t = 61.2, j = 61200
t = 61.3, j = 61300
t = 61.4, j = 61400
t = 61.5, j = 61500
t = 61.6, j = 61600
t = 61.7, j = 61700
t = 61.8, j = 61800
t = 61.9, j = 61900
t = 62, j = 62000
t = 62.1, j = 62100
t = 62.2, j = 62200
t = 62.3, j = 62300
t = 62.4, j = 62400
t = 62.5, j = 62500
t = 62.6, j = 62600
t = 62.7, j = 62700
t = 62.8, j = 62800
t = 62.9, j = 62900
t = 63, j = 63000
t = 63.1, j = 63100
t = 63.2, j = 63200
t = 63.3, j = 63300
t = 63.4, j = 63400
t = 63.5, j = 63500
t = 63.6, j = 63600
t = 63.7, j = 63700
t = 63.8, j = 63800
t = 63.9, j = 63900
t = 64, j = 64000


	-------- Clock Profile ----------


Commenced  at Fri Jun 25 15:07:35 2004
Terminated at Fri Jun 25 16:48:36 2004
CPU        1 hrs 0 min 2 sec ------> 3601.97 seconds.
Wall clock 1 hrs 41 min 1 sec ------> 6061 seconds.


	-------- Memory Usage -----------
Maximum memory used 0 bytes.
Current memory used 0 bytes.
Destructor for BIDOMAIN_PROBLEM is called.
Destructor for HEART_PROBLEM is called.